FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927074

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927074
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480708
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28090.5843464223603518No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20810.4329031345432154No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14150.2943574893698462No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11310.2352779650016226No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11160.23215756758780798No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10890.22654085224294165No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC10770.22404453431188998No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG9260.19263253367948943No Hit
TCCTGCGATCGTTGCTGTCCGGGCTACCACC7390.15373157925393377No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7030.14624262546077868No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6800.14145801609292957No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5910.12294365810429615No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA5890.12252760511578754No Hit
TTCGGCGGTGGCATCGAAGCACTGGATGGCG5590.11628681028815831No Hit
CTGGGTGAGGCAGAATCCTTCACCATGGCCA5500.11441457183986951No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA5440.11316641287434367No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5130.10671759155246013No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5070.10546943258693427No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5000.10401324712715411No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT4970.10338916764439118No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA4860.10110087620759381No Hit

[OK]Adapter Content

Adapter graph