FastQCFastQC Report
Wed 31 May 2023
EGAF00007927075

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927075
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486262
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20340.4182930189897627No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12860.2644664810328588No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10670.21942903208558348No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT10110.20791260678399712No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA9390.19310577425338601No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8700.1789158930782171No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8070.1659599146139324No Hit
GCCAGCGGTGTTCAGAGAACGGCGTTCTTTTGCGACGCTAGAGT6820.14025360813717708No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6280.12914848373921878No Hit
ACGATCGCCGAAGCGGCTGGATTTGGAAGTACCGGTGCCGAAAC5740.11804335934126046No Hit
GGACGCAGAACGACCGGTCACGACGCTAGAGCGGTGTTTAGCGC5440.11187384578683918No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT5440.11187384578683918No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT5350.11002299172051282No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA5120.10529303132878984No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)