FastQCFastQC Report
Wed 31 May 2023
EGAF00007927084

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927084
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences392015
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32260.8229276940933382No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22540.5749779982908817No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21670.5527849699628841No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC19560.498960498960499No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT19410.4951341147660166No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG18890.48186931622514445No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT18540.47294108643801896No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG16150.41197403160593343No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG15420.393352295192786No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG14610.37268982054258126No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG12960.33059959440327535No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG12200.31121258115123146No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG11200.28570335318801576No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA10850.2767751234008903No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10130.258408479267375No Hit
CCGGCTCTGGGCGCTCGTCGTAAGAAAAAAA9820.2505006185987781No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC9400.23978674285422752No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG8740.22295065239850514No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC8570.21861408364475848No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8010.2043289159853577No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7930.20228817774830044No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6920.1765238575054526No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6860.17499330382765965No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6770.17269747331097024No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6740.17193219647207378No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC6720.17142201191280945No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG6610.1686159968368557No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6380.16274887440531613No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG6270.1599428593293624No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG5830.1487187990255475No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG5560.14183130747547926No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5320.13570909276430748No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5320.13570909276430748No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5280.13468872364577886No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT5230.13341326224761807No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT4880.12448503246049258No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4560.11632207951226356No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG4510.11504661811410277No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC3980.10152672729359846No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)