FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927086

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927086
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461488
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26100.5655618347606005No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24280.5261241895780606No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22650.49080366120029123No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16250.3521218319869639No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15490.3356533647678813No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9860.2136566931317824No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9530.20650591131297025No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9430.204339007731512No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9210.19957181985230382No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9030.19567139340567904No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8520.184620185140242No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8190.17746940332142982No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7140.1547169157161183No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6640.1438823978088271No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6360.13781506778074404No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6240.13521478348299415No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5960.12914745345491108No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG5930.1284973823804736No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5660.12264674271053634No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5310.11506258017543253No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4740.10271122976112056No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4700.10184446832853726No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)