FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927088

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927088
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465899
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26900.5773783588288448No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24540.5267236031843812No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT23770.5101964159613993No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16240.3485734032483435No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15780.3387000186735752No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10530.22601465124415376No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10440.22408290208822085No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10010.21485343389876346No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9780.2099167416113793No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9440.20261902257785483No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7920.16999392572209857No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7670.16462795584450707No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6850.14702757464600696No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6700.14380799271945208No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6500.13951521681737886No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG6260.13436388573489105No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6020.1292125546524032No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5930.12728080549647025No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5020.10774867514203722No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4960.10646084237141526No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4890.10495837080568965No Hit

[OK]Adapter Content

Adapter graph