FastQCFastQC Report
Wed 31 May 2023
EGAF00007927089

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927089
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498889
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15680.31429837098031826No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12570.2519598547973597No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12240.2453451569387178No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11630.23311798816971313No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10290.20625830595583386No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9580.19202668329027098No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG6790.13610241957629854No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6660.13349662951077293No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6490.1300890578866241No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6470.12968816710731246No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6160.12347436002798216No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG5550.11124719125897745No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT5250.10523382956930298No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5040.10102447638653086No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)