FastQCFastQC Report
Wed 31 May 2023
EGAF00007927090

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927090
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498889
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27500.5512248215534918No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24710.49530055783951943No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19790.39668142612885837No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12900.25857455265600165No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12850.25757232570772254No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11170.2238975002455456No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9960.19964360809719195No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8520.17077947198675456No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG7420.1487304791246149No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7140.14311800821425205No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6730.13489974723836365No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6540.13109128483490315No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6090.12207124230039147No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5790.11605788061071702No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5300.10623605651758207No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)