FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927092

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927092
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502706
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28980.57648008975425No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23770.4728409845913914No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19460.38710498780599395No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12770.2540252155335325No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12380.24626720190329934No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11650.23174579177491417No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11250.22378885471826476No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9050.18002570090669298No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG7410.14740225897443038No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6680.1328808488460452No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6670.13268192541962895No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6560.1304937677290504No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6190.12313360095164967No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5870.11676805130633014No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5680.11298850620442168No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5080.10105310061944756No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)