FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927094

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927094
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454956
Sequences flagged as poor quality0
Sequence length31
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG58191.2790247848143557No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC57771.2697931228514405No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG36220.7961209435637733No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT35370.7774378181626355No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA33170.729081493594985No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG26490.5822541080895736No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26380.579836291861191No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC25580.5622521738365908No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG23540.5174126728738604No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG23470.5158740625467079No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22960.5046641873060251No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC20340.4470762007754596No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG18640.4097099499731843No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18270.4015772953868066No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC17100.3758605227758289No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT14660.3222289628007983No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13930.30618345510335065No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC11950.2626627629924652No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC11230.24683705677032505No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC10580.2325499608753374No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA10490.23057174759756988No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9830.2160648502272747No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC9170.20155795285697956No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC8640.18990847466568195No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8340.1833144304064569No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT8300.1824352245052269No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8040.17672038614723182No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7740.17012634188800674No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7250.15935606959793916No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7150.15715805484486411No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6760.14858579730787155No Hit
GAACGCGCACGTGGTCGTGGCCGTGGCCGTG6550.14396996632641398No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5770.1268254512524288No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG5570.12242942174627877No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5410.11891259814135872No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5330.11715418633889872No Hit
GACAAAGCGGAAGCTCAGAGCACCCCGGAAC5300.1164947819129762No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5140.11297795830805617No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4940.1085819288019061No Hit
CGTCCTTCCGATATCGACACCGCGGCACGCG4670.10264728896860356No Hit
CCGTCTGGCTGGTACAGCTATTTTTTCAAAA4640.10198788454268105No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)