FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927100

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927100
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476895
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26340.5523228383606454No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20550.4309124650080206No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20460.42902525713207307No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16590.3478753184663291No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15380.32250285702303444No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13420.281403663280177No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11240.23569129472944778No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10470.21954518290189665No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC8810.18473668207886432No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8030.16838088048731903No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6430.1348305182482517No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6210.13021734344037997No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6060.1270719969804674No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5800.12162006311661896No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5430.11386154184883465No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5320.11155495444489878No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5260.11029681586093375No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5210.10924836704096288No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5090.10673208987303286No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)