FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927102

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927102
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480092
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27320.5690575972938521No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19470.40554727010656294No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19250.40096481507711024No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17350.36138906709547336No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17060.355348558193013No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13540.28202927772177No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12180.2537013739033352No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10290.21433391933212803No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC8560.1782991593277955No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7690.16017763262041443No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6360.13247460903326863No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6300.1312248485706906No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6110.12726727377252695No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5820.12122676487006656No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5340.11122868116944253No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5190.1081042800129975No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4990.10393841180440415No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4840.10081401064795914No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)