FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007927104

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927104
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447940
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62221.389025315890521No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18830.4203687993927758No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18700.4174666249944189No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16400.3661204625619503No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14150.3158905210519266No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12340.2754833236594187No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10850.2422199401705586No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9880.22056525427512613No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC7930.17703263829977228No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7490.16720989418225657No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6230.13908112693664332No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5750.12836540608117158No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5640.12590972005179266No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5360.11965888288610083No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5310.11854266196365584No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5080.113408045720409No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4990.11139884806000803No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4730.10559449926329419No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4510.10068312720453632No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)