FastQCFastQC Report
Sun 21 May 2023
EGAF00007927106

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927106
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479377
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT67401.405991526502106No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27000.5632310269370454No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22420.4676903564417984No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC17990.3752787472073128No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11800.2461528191798939No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11070.2309247210441886No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9960.20776966771455455No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9740.20318037786543783No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9470.1975480675960674No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8490.17710486735909317No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8440.17606184693883936No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC8330.17376720201428103No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7620.15895631204667723No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7330.15290679360920528No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6490.13538405054894165No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6420.13392382196058633No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6340.1322549892881803No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6320.13183778112007877No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG6000.1251624504304545No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5750.11994734832918559No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5690.11869572382488104No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5510.11494085031196742No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5320.11097737271500302No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5290.11035156046285075No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)