FastQCFastQC Report
Wed 31 May 2023
EGAF00007927108

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927108
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482012
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT73521.5252732297121234No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28350.588159630880559No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT23700.4916890035932715No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC18310.3798660614258566No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11550.23962059035874625No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10430.21638465432395876No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9550.19812784743948286No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9360.19418603686215283No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9110.1889994439972449No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC8730.18111582284258484No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8460.17551430254848427No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8060.16721575396463156No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7950.1649336531040721No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7080.14688430993419252No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6920.14356489050065144No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6830.14169771706928458No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6610.1371335153481656No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6600.1369260516335693No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG5930.12302598275561603No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5850.1213662730388455No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5620.1165946076031302No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5600.11617968017393757No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5550.11514236160095599No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5150.10684381301710331No Hit

[OK]Adapter Content

Adapter graph