FastQCFastQC Report
Wed 31 May 2023
EGAF00007927111

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927111
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493366
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12170.2466728554460583No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10190.20654037773174477No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8290.16802941426851467No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7930.16073260013863946No Hit
CAGGCCGGTGCGCAGGTTGGTGAATTTAGCAATCGGCAGGCCAC7250.1469497290044308No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6550.13276147930745127No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6190.1254646651775761No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5040.10215539781825257No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)