FastQCFastQC Report
Sun 21 May 2023
EGAF00007927114

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927114
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497398
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29960.6023345489929594No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26640.5355871957667703No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11610.23341469004700463No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8480.17048721546930226No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8010.16103804197041405No Hit
GAACGTACCACTGACGGTAAACTGGATCCGC7590.1525940996948118No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6780.13630935387757892No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5690.11439531320994456No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5400.10856497211488586No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5230.10514718595571353No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5130.10313672350914158No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)