FastQCFastQC Report
Sun 21 May 2023
EGAF00007927115

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927115
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477039
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG16090.3372889847580596No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10340.21675376646353864No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10210.21402862239774945No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG9260.1941141080708286No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG8560.17944025540888692No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8320.1744092202105069No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8100.16979743794532523No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG8030.16833005267913106No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7810.1637182704139494No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6580.13793421502225184No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6010.12598550642609932No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5840.1224218564939135No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT5070.10628061856577764No Hit
ACGGCGCCACGCGTTGCGCAGTTCACGGGTCGGTACGACAACAA4830.10124958336739764No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)