FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927116

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927116
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477039
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28420.5957584180748324No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16150.33854674355765463No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG15970.3347734671588696No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10590.2219944281285178No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10380.2175922723299353No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC9870.20690132253337779No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9580.20082215500200193No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC9500.19914514326920862No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9080.19034083167204358No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8040.16853967914573023No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7990.1674915468127344No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6850.14359412962042936No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6520.13667645622265684No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5820.12200260356071517No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5650.11843895362852933No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG5370.11256941256375264No Hit
GACGTTGGCCGTGCATGCGCAGGTTGTCGTG4840.10145920983399681No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)