FastQCFastQC Report
Wed 31 May 2023
EGAF00007927117

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927117
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444670
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG14640.32923291429599477No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9460.21274203341804035No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG9130.20532079969415523No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT9130.20532079969415523No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG8260.18575572896754897No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7420.16686531585220502No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7350.16529111475925967No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7310.16439157127757661No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG7210.162142712573369No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6240.14032878314255515No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5440.12233791350889424No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5410.12166325589763195No Hit
ACGGCGCCACGCGTTGCGCAGTTCACGGGTCGGTACGACAACAA4880.1097443047653316No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT4820.10839498954280703No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)