FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927118

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927118
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444670
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62731.4107090651494367No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15020.33777857737198375No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG14470.32540985449884186No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9840.2212876964940293No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9470.2129669192884611No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9240.2077945442687836No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8890.19992353880405694No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC8830.19857422358153237No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8160.18350687026334134No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7820.17586075066903548No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7510.16888928868599187No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5970.1342568646411946No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5810.13065869071446243No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5280.11873973958216205No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5160.11604110913711291No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG5130.11536645152585062No Hit
GACGTTGGCCGTGCATGCGCAGGTTGTCGTG4890.10996919063575236No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4680.10524658735691636No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)