FastQCFastQC Report
Sun 21 May 2023
EGAF00007927120

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927120
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448039
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63071.4076899555619042No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15180.33880979111193443No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG14510.3238557357730019No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9840.219623738112084No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC9800.21873095868886416No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9700.2164990101308145No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC9190.20511607248476135No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9120.20355370849412663No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8970.2002057856570522No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8150.18190380748104518No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7190.1604771013237687No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6110.13637205689683263No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6030.13458649805039294No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5260.11740049415341076No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG5010.11182062275828666No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4940.11025825876765191No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4820.10757992049799235No Hit
GACGTTGGCCGTGCATGCGCAGGTTGTCGTG4560.10177685424706331No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4490.10021449025642856No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)