FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927122

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927122
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences417698
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG54651.3083615435075102No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22270.5331603215720448No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16590.39717690771801634No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15540.3720391287485217No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12800.30644149600907833No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10000.23940741875709246No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9620.23030993684432294No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8870.21235438043754098No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8150.19511704628703033No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6790.16255763733606576No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6660.15944534089222356No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6460.1546571925170817No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5170.12377363549741681No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4700.11252148681583346No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4660.11156385714080508No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4260.10198756039052137No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4190.10031170845922173No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)