FastQCFastQC Report
Sun 21 May 2023
EGAF00007927124

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927124
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455920
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27570.6047113528689244No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24020.5268468152307422No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17790.39020003509387613No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17660.3873486576592385No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13870.30422003860326374No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11220.24609580628180383No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10870.23841902088085629No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9490.20815055272854888No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7990.17525004386734513No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7700.16888927882084576No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7420.16274785050008775No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6890.15112300403579576No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6040.1324793823477803No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5220.11449377083698895No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5140.11273907703105808No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4930.10813300579048957No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4800.10528162835585189No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4660.1022109141954729No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)