FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927127

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927127
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434972
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13740.3158824016258518No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10370.23840615028093765No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8020.1843796842095583No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7650.17587338955151136No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6910.15886080023541746No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6830.15702160139043433No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC6750.1551824025454512No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6740.1549525026898283No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6430.1478256071655187No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6400.14713590759865003No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA6380.14667610788740426No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6230.1432276100530609No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5750.13219241698316214No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5610.1289738190044417No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5470.1257552210257212No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5240.1204675243463947No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5240.1204675243463947No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG4500.1034549350303008No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)