FastQCFastQC Report
Wed 31 May 2023
EGAF00007927130

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927130
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444730
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63301.4233355069367932No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17570.39507116677534687No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17030.38292896813797134No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11550.25970813752164235No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11150.25071391630877166No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9540.21451217592696692No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9290.20889078766892274No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8980.20192026622894793No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8940.20102084410766083No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8550.19225147842511187No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6630.14907921660333234No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6270.1409844175117487No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6250.14053470645110516No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5770.1297416409956603No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5610.126143952510512No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5590.12569424144986846No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5020.11287747622152768No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4810.10815551008477053No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4610.10365839947833516No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)