FastQCFastQC Report
Sun 21 May 2023
EGAF00007927132

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927132
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481213
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29350.6099170221918361No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19060.3960824001014104No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18640.3873544563426175No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12060.25061667078819566No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12050.2504088626034625No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10630.22090010037135324No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10100.20988626658049553No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9860.20489887014689961No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9590.1992880491591042No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9170.1905601054003113No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7150.14858285208421218No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7070.14692038660634688No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6850.14234860654221726No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6620.1375690182933545No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6220.12925669090402794No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5870.12198340443836721No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5640.11720381618950446No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5120.10639779058337992No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5040.1047353251055146No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)