FastQCFastQC Report
Wed 31 May 2023
EGAF00007927134

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927134
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467372
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27620.5909639430689044No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20710.44311597613892145No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA16480.3526099124466164No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16200.34661896733223213No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8980.19213816831132374No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8550.18293778831423363No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8260.17673288087433564No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA7600.1626113673904299No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG7550.16154155576286128No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6600.14121513483905754No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6390.13672192600326935No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5450.11660946740497934No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5410.11575361810292444No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5110.10933474833751274No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5090.1089068236864853No Hit
CCGAACACCTCTAGCCCGTCTATGCCGGAAC4850.10377172787415592No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)