FastQCFastQC Report
Sun 21 May 2023
EGAF00007927136

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927136
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434055
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60641.3970579765237123No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20220.465839582541383No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17090.39372890532305815No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA15070.3471910241789635No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8320.19168077778161755No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8010.18453882572485053No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7800.17970072917026644No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA6990.16103949960258493No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5860.1350059324279181No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5440.12532973931874994No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5310.12233472716591215No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5020.11565354620958174No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4800.11058506410477935No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC4610.10620773865063184No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4570.10528619644975866No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG4500.10367349759823064No Hit
CCGAACACCTCTAGCCCGTCTATGCCGGAAC4450.1025215698471392No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)