FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007927138

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927138
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438175
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64991.4831973526559024No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20240.461915901181035No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17430.3977862726079763No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA14780.3373081531351629No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8380.19124778912534945No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8160.18622696411251213No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7900.18029326182461344No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA6540.1492554344725281No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6310.14400639014092542No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5810.13259542420265877No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5790.13213898556512807No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5670.12940035373994407No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5010.11433787870143207No Hit
CCGAACACCTCTAGCCCGTCTATGCCGGAAC4680.10680664118217606No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)