FastQCFastQC Report
Sun 21 May 2023
EGAF00007927140

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927140
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462822
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65201.4087489358759955No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33110.715393823111261No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10390.22449235343177293No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9730.21023201144284412No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9290.20072511678355826No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7640.1650742618112363No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7140.15427097242568416No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6790.1467086698557977No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5160.11148994645889782No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT4640.10025452549792362No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)