FastQCFastQC Report
Sun 21 May 2023
EGAF00007927145

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927145
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440449
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8540.19389305004665694No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6880.1562042370399297No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6800.1543879087022561No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6150.1396302409586581No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5730.1300945171858717No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC4660.10580112566948728No Hit
GGTGGTACGGGTGGAAGAGGAGCGCGCGCTCGGCAGGCTGACGG4600.10443887941623207No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)