FastQCFastQC Report
Wed 31 May 2023
EGAF00007927146

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927146
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440449
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19970.4534009612917727No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17450.3961866186550543No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11780.26745434772243776No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7610.17277823312120133No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5720.1298674761436625No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5520.12532665529947848No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5390.12237512175075889No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5390.12237512175075889No Hit
TCCGAACCAGAAATCACTGAACACCGTGACC5030.11420164423122767No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4920.11170419276692647No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4610.10466592045844127No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)