FastQCFastQC Report
Sun 21 May 2023
EGAF00007927148

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927148
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442087
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCCAGGGCAAACTGGAATACCGTCACACCT16010.36214591245614547No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13550.30650075663839926No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12920.29225016795336667No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12390.28026157747230745No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7680.17372146206515912No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5840.13210069511204808No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5710.12916009744688264No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5060.11445710912105535No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4990.11287371037827397No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)