FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927149

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927149
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443588
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT14100.3178625210781176No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG12960.2921629980973336No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG12390.2793132366069416No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG8320.18756143087730054No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6090.1372895569762933No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT5960.13435890961883548No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5380.12128371371633137No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT5300.11948023841943425No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5240.1181276319467614No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)