FastQCFastQC Report
Wed 31 May 2023
EGAF00007927150

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927150
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443588
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCCAGGGCAAACTGGAATACCGTCACACCT15650.35280485495549924No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14050.31673534901755684No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12370.2788623677827173No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12160.27412824512836237No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8050.18147470175027278No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT6140.138416729036854No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5240.1181276319467614No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5160.11632415664986429No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT4990.1124917716439579No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)