FastQCFastQC Report
Sun 21 May 2023
EGAF00007927151

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927151
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431393
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT13820.3203575394130178No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG12790.29648139863187395No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11920.2763141729235291No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7630.17686888753410465No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6180.14325684468686326No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT5840.13537540015716526No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT5740.13305732823666588No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5020.11636721040907015No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT4630.10732672991912247No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)