FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927152

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927152
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431393
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG18820.4362611354379881No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT14660.3398293435452128No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12880.2985676633603234No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12610.292308869174975No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12240.2837320030691272No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7630.17686888753410465No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5880.13630262892536504No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5250.12169877582621877No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4770.11057203060782163No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)