FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927157

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927157
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434825
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG16360.376243316276663No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG12380.2847122405565457No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG9050.20812970735353303No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8000.1839820617489795No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5670.1303972862645892No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT5230.12027827286839533No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4410.10142011153912495No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)