FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927158

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927158
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434825
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21330.4905421721382165No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG16050.3691140113838901No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13010.2992008279192779No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8500.1954809406082907No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8010.1842120393261657No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6670.15339504398321163No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC5290.12165813833151268No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4780.10992928189501525No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4750.10923934916345657No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)