FastQCFastQC Report
Wed 31 May 2023
EGAF00007927159

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927159
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444052
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG16430.37000171151126443No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG12100.2724906092079306No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG8900.2004269770207093No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7750.17452910920342662No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5550.12498536207471198No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT5210.1173286011548197No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4590.10336627241854558No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)