FastQCFastQC Report
Sun 21 May 2023
EGAF00007927160

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927160
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444052
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19500.43913775864087995No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG16010.36054335978669166No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12920.2909569149559061No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8730.19659859656076314No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7680.17295271724933114No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6670.15020763334023943No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC5290.11913019195950024No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4760.10719465287849171No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4640.10449226667147091No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4510.10156468161386505No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)