FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007927166

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927166
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440205
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21500.48840880953192267No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15220.34574800377097037No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9100.20672186822048821No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8820.20036119535216546No Hit
ATGCGCGACTACCAGCGTCCGATGGTACAGT7160.16265149191853795No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4540.1031337672220897No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4420.10040776456423711No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)