FastQCFastQC Report
Wed 31 May 2023
EGAF00007927167

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927167
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448739
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9330.2079159600569596No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT8580.19120245844466383No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8120.1809515107891224No Hit
GAAGTGGGTATCTGGGCATTCGTCGAACGGATCGTCGATGCTAT7050.15710691515558042No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6370.14195334036043225No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)