FastQCFastQC Report
Wed 31 May 2023
EGAF00007927168

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927168
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448739
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19600.43677950880133No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16640.3708168891048026No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9300.2072474199924678No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8510.1896425316275162No Hit
ATGCGCGACTACCAGCGTCCGATGGTACAGT7180.1600039221017117No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4940.11008626395298826No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4620.10295516993174207No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)