FastQCFastQC Report
Wed 31 May 2023
EGAF00007927175

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927175
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448229
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7230.16130147759292685No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6680.14903096408309147No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5900.13162914492368855No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5410.1206972328876534No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)