FastQCFastQC Report
Sun 21 May 2023
EGAF00007927178

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927178
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429428
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21170.492981361252643No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10020.23333364382387733No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8220.19141742038246226No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7320.1704593086617547No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG5850.13622772618459905No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5760.1341319150125283No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)