FastQCFastQC Report
Sun 21 May 2023
EGAF00007927179

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927179
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500168
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15180.303498024663713No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8320.16634410837958444No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8320.16634410837958444No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6890.13775371475184336No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5960.1191599622526831No Hit
GCATTTAGACGGAATGGACGCTGCGTTACCAGCGTTCAGACCTT5170.10336526926952544No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)