FastQCFastQC Report
Sun 21 May 2023
EGAF00007927181

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927181
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510355
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15540.30449393069530034No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8600.16851015469624087No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8510.16674667633314066No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7200.1410782690480156No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6160.12070029685219114No Hit
GCATTTAGACGGAATGGACGCTGCGTTACCAGCGTTCAGACCTT5960.11678145604530181No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)