FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927186

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927186
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509387
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG54601.0718765889196231No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14050.27582172297290664No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6550.12858592779163974No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5360.10522451495621207No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5140.10090559829756159No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)