FastQCFastQC Report
Sun 21 May 2023
EGAF00007927191

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927191
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463934
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13110.28258329848642266No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11590.24982001750248958No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7220.15562558467368204No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7130.15368565356279126No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6400.13795065677445498No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4740.10216970517358073No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4660.10044532196390003No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)